{
  "_id": "6a4796572f27a93436c0ea25",
  "Package": "MRFtools",
  "Version": "0.0-3",
  "Title": "Tools for Constructing and Plotting Markov Random Fields in R\nfor Graphical Data",
  "Authors@R": "c(\nperson(\ngiven = \"Eric J.\",\nfamily = \"Pedersen\",\nemail = \"eric.j.pedersen@gmail.com\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0003-1016-540X\")\n),\nperson(\ngiven = \"Gavin L.\",\nfamily = \"Simpson\",\nemail = \"ucfagls@gmail.com\",\nrole = c(\"aut\"),\ncomment = c(ORCID = \"0000-0002-4842-3657\")\n),\nperson(\ngiven = \"Valentin\",\nfamily = \"Lucet\",\nemail = \"valentin.lucet@gmail.com\",\nrole = c(\"ctb\"),\ncomment = c(ORCID = \"0000-0003-0268-818X\")\n))",
  "Maintainer": "Eric J. Pedersen <eric.j.pedersen@gmail.com>",
  "Description": "Utility functions for using Markov Random Field smooths in\nGeneralized Additive Models fitted with the 'mgcv' package.",
  "License": "GPL-3",
  "URL": "https://github.com/eric-pedersen/MRFtools",
  "BugReports": "https://github.com/eric-pedersen/MRFtools/issues",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.3",
  "Encoding": "UTF-8",
  "Config/testthat/edition": "3",
  "VignetteBuilder": "quarto",
  "Config/pak/sysreqs": "libabsl-dev cmake libfontconfig1-dev\nlibfreetype6-dev libgdal-dev gdal-bin libgeos-dev libglpk-dev\nlibicu-dev libxml2-dev libssl-dev libproj-dev libsqlite3-dev\nlibudunits2-dev",
  "Repository": "https://gavinsimpson.r-universe.dev",
  "Date/Publication": "2026-03-26 07:37:48 UTC",
  "RemoteUrl": "https://github.com/gavinsimpson/MRFtools",
  "RemoteRef": "HEAD",
  "RemoteSha": "1193d58ed7886fabf4fe0996d798d11679a48e0b",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-03 06:34:03 UTC",
    "User": "root"
  },
  "Author": "Eric J. Pedersen [aut, cre] (ORCID:\n<https://orcid.org/0000-0003-1016-540X>),\nGavin L. Simpson [aut] (ORCID: <https://orcid.org/0000-0002-4842-3657>),\nValentin Lucet [ctb] (ORCID: <https://orcid.org/0000-0003-0268-818X>)",
  "_user": "gavinsimpson",
  "_type": "src",
  "_file": "MRFtools_0.0-3.tar.gz",
  "_fileid": "https://r2.ropensci.org/bf98720f8a5b8562e529eef6a86a37fb84f56439ec3e7ad27d1f92cefefc3128",
  "_filesize": 479746,
  "_sha256": "bf98720f8a5b8562e529eef6a86a37fb84f56439ec3e7ad27d1f92cefefc3128",
  "_expires": "2026-10-11T11:00:38.000Z",
  "_created": "2026-07-03T06:34:03.000Z",
  "_published": "2026-07-03T11:00:39.625Z",
  "_jobs": [
    {
      "job": 84985784345,
      "time": 212,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8059508182"
    },
    {
      "job": 84985784679,
      "time": 220,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8059510318"
    },
    {
      "job": 84985784642,
      "time": 192,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8059502845"
    },
    {
      "job": 84985784359,
      "time": 191,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8059502854"
    },
    {
      "job": 84985784114,
      "time": 220,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8059451142"
    },
    {
      "job": 84985784806,
      "time": 199,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8059505225"
    },
    {
      "job": 84985784385,
      "time": 221,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8059510537"
    },
    {
      "job": 84985784441,
      "time": 181,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8059500227"
    },
    {
      "job": 84985784789,
      "time": 168,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8059496720"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/gavinsimpson/actions/runs/28642902979",
  "_status": "success",
  "_upstream": "https://github.com/gavinsimpson/MRFtools",
  "_commit": {
    "id": "1193d58ed7886fabf4fe0996d798d11679a48e0b",
    "author": "Gavin Simpson <ucfagls@gmail.com>",
    "committer": "Gavin Simpson <ucfagls@gmail.com>",
    "message": "Merge branch 'config-pkgdown'\n",
    "time": 1774510668
  },
  "_maintainer": {
    "name": "Eric J. Pedersen",
    "email": "eric.j.pedersen@gmail.com",
    "login": "eric-pedersen",
    "description": "I'm a marine ecologist working with statistical and theoretical tools to understand what drivers the spatiotemporal distribution of marine invertebrates",
    "uuid": 1554249,
    "orcid": "0000-0003-1016-540X"
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.1.0",
      "role": "Depends"
    },
    {
      "package": "gratia",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "generics",
      "role": "Imports"
    },
    {
      "package": "assertthat",
      "role": "Imports"
    },
    {
      "package": "sf",
      "role": "Imports"
    },
    {
      "package": "ape",
      "role": "Imports"
    },
    {
      "package": "colorspace",
      "role": "Imports"
    },
    {
      "package": "tidygraph",
      "role": "Imports"
    },
    {
      "package": "ggraph",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "tidyr",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "vdiffr",
      "role": "Suggests"
    },
    {
      "package": "mgcv",
      "role": "Suggests"
    },
    {
      "package": "gamm4",
      "role": "Suggests"
    },
    {
      "package": "sp",
      "role": "Suggests"
    },
    {
      "package": "quarto",
      "role": "Suggests"
    },
    {
      "package": "withr",
      "role": "Suggests"
    }
  ],
  "_owner": "gavinsimpson",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-12",
      "n": 16
    },
    {
      "week": "2026-13",
      "n": 7
    }
  ],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "gavinsimpson",
      "count": 180,
      "uuid": 514696
    },
    {
      "user": "eric-pedersen",
      "count": 31,
      "uuid": 1554249
    },
    {
      "user": "vlucet",
      "count": 10,
      "uuid": 11233873
    },
    {
      "user": "noamross",
      "count": 2,
      "uuid": 571752
    }
  ],
  "_userbio": {
    "uuid": 514696,
    "type": "user",
    "name": "Gavin Simpson",
    "followers": 570
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/MRFtools"
  },
  "_devurl": "https://github.com/eric-pedersen/mrftools",
  "_searchresults": 9,
  "_quarto": true,
  "_topics": [
    "quarto"
  ],
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/MRFtools.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_cranurl": false,
  "_exports": [
    "as_mrf_penalty",
    "get_config",
    "get_labels",
    "get_model",
    "get_mrf",
    "get_penalty",
    "get_type",
    "mrf_config",
    "mrf_penalty",
    "vis",
    "visualise",
    "visualize"
  ],
  "_help": [
    {
      "page": "as_mrf_penalty",
      "title": "Create a '\"mrf_penalty\"' object from a matrix and a config",
      "topics": [
        "as_mrf_penalty"
      ]
    },
    {
      "page": "as.matrix.mrf_penalty",
      "title": "Convert a MRF penalty object to a matrix",
      "topics": [
        "as.matrix.mrf_penalty"
      ]
    },
    {
      "page": "get_config",
      "title": "Extract configuration details of an MRF penalty",
      "topics": [
        "get_config"
      ]
    },
    {
      "page": "get_labels",
      "title": "Extract MRF node labels from an MRF penalty",
      "topics": [
        "get_labels"
      ]
    },
    {
      "page": "get_model",
      "title": "Extract the model type and parameters from an MRF penalty",
      "topics": [
        "get_model"
      ]
    },
    {
      "page": "get_mrf",
      "title": "Extract a fitted MRF",
      "topics": [
        "get_mrf",
        "get_mrf.bam",
        "get_mrf.gam",
        "get_mrf.gamm",
        "get_mrf.list"
      ]
    },
    {
      "page": "get_penalty",
      "title": "Extract a MRF penalty matrix",
      "topics": [
        "get_penalty",
        "get_penalty.mrf_penalty"
      ]
    },
    {
      "page": "get_type",
      "title": "Extract the type of MRF from the penalty",
      "topics": [
        "get_type",
        "get_type.mrf_config",
        "get_type.mrf_penalty"
      ]
    },
    {
      "page": "mrf_config",
      "title": "MRF penalty configuration data",
      "topics": [
        "mrf_config"
      ]
    },
    {
      "page": "mrf_penalty",
      "title": "Markov Random Field Penalty",
      "topics": [
        "mrf_penalty"
      ]
    },
    {
      "page": "mrf_penalty.dendrogram",
      "title": "MRF penalty from a dendrogram",
      "topics": [
        "mrf_penalty.dendrogram"
      ]
    },
    {
      "page": "mrf_penalty.factor",
      "title": "Fully connected graph and random effect MRF penalties from a factor",
      "topics": [
        "mrf_penalty.factor"
      ]
    },
    {
      "page": "mrf_penalty.hclust",
      "title": "MRF penalty from a hclust object",
      "topics": [
        "mrf_penalty.hclust"
      ]
    },
    {
      "page": "mrf_penalty.numeric",
      "title": "Continuous-time random walk MRF penalty from a numeric vector",
      "topics": [
        "mrf_penalty.numeric"
      ]
    },
    {
      "page": "mrf_penalty.phylo",
      "title": "MRF penalty from a phylogeny",
      "topics": [
        "mrf_penalty.phylo"
      ]
    },
    {
      "page": "mrf_penalty.sf",
      "title": "MRF penalty from polygon or multi-polygon simple features",
      "topics": [
        "mrf_penalty.sf"
      ]
    },
    {
      "page": "mrf_penalty.SpatialPolygons",
      "title": "MRF penalty from a SpatialPolygons",
      "topics": [
        "mrf_penalty.SpatialPolygons"
      ]
    },
    {
      "page": "mrf_penalty.SpatialPolygonsDataFrame",
      "title": "MRF penalty from a SpatialPoylgonsDataFrame",
      "topics": [
        "mrf_penalty.SpatialPolygonsDataFrame"
      ]
    },
    {
      "page": "vis",
      "title": "Visualize a data set or object",
      "topics": [
        "vis",
        "visualise"
      ]
    },
    {
      "page": "visualize.cyclic_mrf_penalty",
      "title": "Visualizing penalty matrix or graph object for a cyclic 1D MRF",
      "topics": [
        "visualize.cyclic_mrf_penalty"
      ]
    },
    {
      "page": "visualize.dendrogram_mrf_penalty",
      "title": "Plot a thing",
      "topics": [
        "visualize.dendrogram_mrf_penalty"
      ]
    },
    {
      "page": "visualize.fully_connected_graph_mrf_penalty",
      "title": "Plot a thing",
      "topics": [
        "visualize.fully_connected_graph_mrf_penalty"
      ]
    },
    {
      "page": "visualize.sequential_mrf_penalty",
      "title": "Plot a thing",
      "topics": [
        "visualize.sequential_mrf_penalty"
      ]
    }
  ],
  "_readme": "https://github.com/gavinsimpson/MRFtools/raw/HEAD/README.md",
  "_rundeps": [
    "ape",
    "assertthat",
    "base64enc",
    "BH",
    "cachem",
    "class",
    "classInt",
    "cli",
    "colorspace",
    "cpp11",
    "DBI",
    "digest",
    "dplyr",
    "e1071",
    "farver",
    "fastmap",
    "generics",
    "ggforce",
    "ggokabeito",
    "ggplot2",
    "ggraph",
    "ggrepel",
    "glue",
    "graphlayouts",
    "gratia",
    "gridExtra",
    "gtable",
    "igraph",
    "isoband",
    "jsonlite",
    "KernSmooth",
    "labeling",
    "lattice",
    "lifecycle",
    "magrittr",
    "MASS",
    "Matrix",
    "memoise",
    "mgcv",
    "mvnfast",
    "nlme",
    "patchwork",
    "pillar",
    "pkgconfig",
    "polyclip",
    "proxy",
    "purrr",
    "R6",
    "RColorBrewer",
    "Rcpp",
    "RcppArmadillo",
    "rlang",
    "s2",
    "S7",
    "scales",
    "sf",
    "statmod",
    "stringi",
    "stringr",
    "systemfonts",
    "tibble",
    "tidygraph",
    "tidyr",
    "tidyselect",
    "tweedie",
    "tweenr",
    "units",
    "utf8",
    "vctrs",
    "viridis",
    "viridisLite",
    "withr",
    "wk"
  ],
  "_vignettes": [
    {
      "source": "getting-started.qmd",
      "filename": "getting-started.html",
      "title": "Vignette's Title",
      "engine": "quarto::html",
      "headings": [
        "Installing MRFtools",
        "Setup",
        "Discrete random walks",
        "Creating $\\mathbf{S}$",
        "Creating the data",
        "Fitting the model",
        "Visualising the fitted smooth",
        "Phylogenetic smooth",
        "References"
      ],
      "created": "2026-03-25 20:21:12",
      "modified": "2026-03-25 21:09:38",
      "commits": 2
    }
  ],
  "_score": 3.4771212547196626,
  "_indexed": true,
  "_nocasepkg": "mrftools",
  "_universes": [
    "gavinsimpson",
    "eric-pedersen"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.0-3",
      "date": "2026-07-03T06:36:54.000Z",
      "distro": "resolute",
      "commit": "1193d58ed7886fabf4fe0996d798d11679a48e0b",
      "fileid": "https://r2.ropensci.org/f2ab8613dd3986487432e321db4d55613f74102270b99bfe5b8209612a60f0cc",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/gavinsimpson/actions/runs/28642902979"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.0-3",
      "date": "2026-07-03T06:36:59.000Z",
      "distro": "resolute",
      "commit": "1193d58ed7886fabf4fe0996d798d11679a48e0b",
      "fileid": "https://r2.ropensci.org/aab42f672ac9d1defdd3f3726926a068905c72ed01cdfec7dc519cd6d4639f9b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/gavinsimpson/actions/runs/28642902979"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.0-3",
      "date": "2026-07-03T06:36:33.000Z",
      "commit": "1193d58ed7886fabf4fe0996d798d11679a48e0b",
      "fileid": "https://r2.ropensci.org/9122f12c17a24675e19478de94e9ba37ec589115b1d611ab0e43be70c807c8fa",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/gavinsimpson/actions/runs/28642902979"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.0-3",
      "date": "2026-07-03T06:36:43.000Z",
      "commit": "1193d58ed7886fabf4fe0996d798d11679a48e0b",
      "fileid": "https://r2.ropensci.org/85f570ef0a602298706e5e3bd88665584da43729cdb0cb1b040d9bbe93857efd",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/gavinsimpson/actions/runs/28642902979"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.0-3",
      "date": "2026-07-03T06:37:41.000Z",
      "commit": "1193d58ed7886fabf4fe0996d798d11679a48e0b",
      "fileid": "https://r2.ropensci.org/e63715ce73e98012914e7f66ff21f3f2a9a5e6c50fd14da0abc734bac8ac72ff",
      "status": "success",
      "buildurl": "https://github.com/r-universe/gavinsimpson/actions/runs/28642902979"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.0-3",
      "date": "2026-07-03T06:36:48.000Z",
      "commit": "1193d58ed7886fabf4fe0996d798d11679a48e0b",
      "fileid": "https://r2.ropensci.org/203c7045599f5a49d4af35b70dfe4db0db3ceb59f6f41e0d8dbf0e79afaed460",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/gavinsimpson/actions/runs/28642902979"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.0-3",
      "date": "2026-07-03T06:36:10.000Z",
      "commit": "1193d58ed7886fabf4fe0996d798d11679a48e0b",
      "fileid": "https://r2.ropensci.org/b348c56f41e7c9aac6f8b8e329f35dc06694e8ea84e3c881a64f73529bfb8a38",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/gavinsimpson/actions/runs/28642902979"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.0-3",
      "date": "2026-07-03T06:35:59.000Z",
      "commit": "1193d58ed7886fabf4fe0996d798d11679a48e0b",
      "fileid": "https://r2.ropensci.org/f2facd84e907ca3203dc2af8684b450c23340cacf89c418f408b988c3aa54538",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/gavinsimpson/actions/runs/28642902979"
    }
  ]
}