{ "_id": "6a36411d3efcd9bda43fc1de", "Package": "coenocliner", "Type": "Package", "Title": "Coenocline Simulation", "Version": "0.2-3999", "Authors@R": "c(person(given = c(\"Gavin\", \"L.\"),\nfamily = \"Simpson\",\nrole = c(\"aut\",\"cre\"),\nemail = \"ucfagls@gmail.com\"),\nperson(given = \"Jari\",\nfamily = \"Oksanen\",\nrole = \"ctb\"),\nperson(given = \"Francisco\",\nfamily = \"Rodriguez-Sanchez\",\nrole = \"ctb\"))", "Maintainer": "Gavin L. Simpson ", "Description": "Simulate species occurrence and abundances (counts) along\ngradients.", "VignetteBuilder": "knitr", "License": "GPL-2", "URL": "https://github.com/gavinsimpson/coenocliner/", "BugReports": "https://github.com/gavinsimpson/coenocliner/issues", "ByteCompile": "true", "RoxygenNote": "7.3.3", "Config/testthat/edition": "3", "Encoding": "UTF-8", "Repository": "https://gavinsimpson.r-universe.dev", "Date/Publication": "2025-11-20 14:43:20 UTC", "RemoteUrl": "https://github.com/gavinsimpson/coenocliner", "RemoteRef": "HEAD", "RemoteSha": "68eeb4556505a3319f3706591f711b68958adabb", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-20 07:26:03 UTC", "User": "root" }, "Author": "Gavin L. Simpson [aut, cre],\nJari Oksanen [ctb],\nFrancisco Rodriguez-Sanchez [ctb]", "MD5sum": "d919f4653134423b10ada5f04e4af46e", "_user": "gavinsimpson", "_type": "src", "_file": "coenocliner_0.2-3999.tar.gz", "_fileid": "c3f4c69e7933b1c2b20eb4a642acc8a56c0e9df6fb0bff6c52658bedb0370db4", "_filesize": 837485, "_sha256": "c3f4c69e7933b1c2b20eb4a642acc8a56c0e9df6fb0bff6c52658bedb0370db4", "_created": "2026-06-20T07:26:03.000Z", "_published": "2026-06-20T07:28:29.557Z", "_distro": "noble", "_jobs": [ { "job": 82465400528, "time": 104, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7763232693" }, { "job": 82465400527, "time": 110, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7763233725" }, { "job": 82465400521, "time": 79, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7763228582" }, { "job": 82465400517, "time": 75, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7763227979" }, { "job": 82465282293, "time": 114, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7763216753" }, { "job": 82465400510, "time": 100, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7763231927" }, { "job": 82465400543, "time": 74, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7763227823" }, { "job": 82465400566, "time": 66, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7763226372" }, { "job": 82465400540, "time": 67, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7763226721" } ], "_buildurl": "https://github.com/r-universe/gavinsimpson/actions/runs/27864159968", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/gavinsimpson/coenocliner", "_commit": { "id": "68eeb4556505a3319f3706591f711b68958adabb", "author": "Gavin Simpson ", "committer": "Gavin Simpson ", "message": "update\n", "time": 1763649800 }, "_maintainer": { "name": "Gavin L. Simpson", "email": "ucfagls@gmail.com", "login": "gavinsimpson", "description": "", "uuid": 514696 }, "_registered": true, "_dependencies": [ { "package": "stats", "role": "Imports" }, { "package": "testthat", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" } ], "_owner": "gavinsimpson", "_selfowned": true, "_usedby": 1, "_updates": [ { "week": "2025-40", "n": 3 }, { "week": "2025-46", "n": 13 }, { "week": "2025-47", "n": 5 } ], "_tags": [], "_stars": 12, "_contributors": [ { "user": "gavinsimpson", "count": 261, "uuid": 514696 }, { "user": "jarioksa", "count": 12, "uuid": 1432933 }, { "user": "pakillo", "count": 5, "uuid": 1597843 }, { "user": "ethanwhite", "count": 1, "uuid": 744427 }, { "user": "hadley", "count": 1, "uuid": 4196 } ], "_userbio": { "uuid": 514696, "type": "user", "name": "Gavin Simpson", "followers": 568 }, "_downloads": { "count": 254, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/coenocliner" }, "_mentions": 2, "_devurl": "https://github.com/gavinsimpson/coenocliner", "_searchresults": 15, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/coenocliner.html", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/gavinsimpson/coenocliner", "_realowner": "gavinsimpson", "_cranurl": true, "_releases": [ { "version": "0.1-0", "date": "2014-07-31" }, { "version": "0.2-0", "date": "2015-05-27" }, { "version": "0.2-1", "date": "2016-02-28" }, { "version": "0.2-2", "date": "2016-05-18" }, { "version": "0.2-3", "date": "2021-02-14" }, { "version": "0.2-4", "date": "2025-11-24" } ], "_exports": [ "Beta", "coenocline", "expand", "Gaussian", "locations", "prettyHead", "showParams", "simJamil" ], "_help": [ { "page": "coenocline", "title": "Simulate species abundance (counts) or occurrence along one or two gradients", "topics": [ "coenocline" ] }, { "page": "coenocliner", "title": "A coenocline simulation package for R", "topics": [ "coenocliner-package", "coenocliner" ] }, { "page": "distributions", "title": "Wrappers to random number generators for use with coenocliner", "topics": [ "Bernoulli", "BetaBinomial", "Binomial", "distributions", "NegBin", "Poisson", "ZIB", "ZIBB", "ZINB", "ZIP" ] }, { "page": "expand", "title": "An 'expand.grid'-like function that repeats sets of vectors for every value in a reference vector.", "topics": [ "expand" ] }, { "page": "locations", "title": "Extract Gradient Locations", "topics": [ "locations", "locations.default" ] }, { "page": "persp.coenocline", "title": "Perspective Plot of Species Simulations Along Gradients", "topics": [ "persp.coenocline" ] }, { "page": "plot.coenocline", "title": "Plot species simulations along gradients", "topics": [ "lines.coenocline", "plot.coenocline" ] }, { "page": "showParams", "title": "List parameters of species response models", "topics": [ "showParams" ] }, { "page": "simJamil", "title": "Simulate species abundance data following Jamil & ter Braak (2013)", "topics": [ "simJamil" ] }, { "page": "species-response", "title": "Species response models for coenocline simulation", "topics": [ "Beta", "Gaussian", "species-response" ] }, { "page": "stack.coenocline", "title": "Stack columns of a species coenocline simulation", "topics": [ "stack.coenocline" ] } ], "_readme": "https://github.com/gavinsimpson/coenocliner/raw/HEAD/README.md", "_rundeps": [], "_vignettes": [ { "source": "coenocliner.Rnw", "filename": "coenocliner.pdf", "title": "An R coenocline simulation package", "engine": "knitr::knitr", "headings": [ "Introduction", "A brief overview of coenocliner", "Future directions", "Appendix" ], "created": "2014-07-28 03:01:55", "modified": "2025-11-14 16:29:30", "commits": 17 } ], "_score": 6.811575005870594, "_indexed": true, "_nocasepkg": "coenocliner", "_universes": [ "gavinsimpson" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.2-3999", "date": "2026-06-20T07:27:48.000Z", "distro": "noble", "commit": "68eeb4556505a3319f3706591f711b68958adabb", "fileid": "32a55d03185f10514ea0bacd272eed484214207f385c6916d0d11922776beeb6", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/gavinsimpson/actions/runs/27864159968" }, { "r": "4.6.0", "os": "linux", "version": "0.2-3999", "date": "2026-06-20T07:27:54.000Z", "distro": "noble", "commit": "68eeb4556505a3319f3706591f711b68958adabb", "fileid": "20c3879196034f7b83a1243a7559974e54e5b12fbde20f46bccfbee2ce6c9a90", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/gavinsimpson/actions/runs/27864159968" }, { "r": "4.5.3", "os": "mac", "version": "0.2-3999", "date": "2026-06-20T07:27:25.000Z", "commit": "68eeb4556505a3319f3706591f711b68958adabb", "fileid": "a6f7a4b49631ec38cd94be670c4a933b36c6ba84a8061a5d60115193856da186", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/gavinsimpson/actions/runs/27864159968" }, { "r": "4.6.0", "os": "mac", "version": "0.2-3999", "date": "2026-06-20T07:27:21.000Z", "commit": "68eeb4556505a3319f3706591f711b68958adabb", "fileid": "c3a01893c7e6156a0a83f31069ab29b39974b3ee0221d2c19823bab93c62e84d", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/gavinsimpson/actions/runs/27864159968" }, { "r": "4.6.0", "os": "wasm", "version": "0.2-3999", "date": "2026-06-20T07:27:55.000Z", "commit": "68eeb4556505a3319f3706591f711b68958adabb", "fileid": "1082e6a80ac9511fed60ace6346fc7863ac54941b2657ee4532b29f5cd65c708", "status": "success", "buildurl": "https://github.com/r-universe/gavinsimpson/actions/runs/27864159968" }, { "r": "4.7.0", "os": "win", "version": "0.2-3999", "date": "2026-06-20T07:27:11.000Z", "commit": "68eeb4556505a3319f3706591f711b68958adabb", "fileid": "744e25dbbd56c103bf1f26bb9da705f62fd8f39cb31fc0315c0017ed4a3cec20", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/gavinsimpson/actions/runs/27864159968" }, { "r": "4.5.3", "os": "win", "version": "0.2-3999", "date": "2026-06-20T07:27:04.000Z", "commit": "68eeb4556505a3319f3706591f711b68958adabb", "fileid": "411c941f0561be8dcf23225326e9fa8fbca572bb43ac3b4b705792fc0dc5afb3", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/gavinsimpson/actions/runs/27864159968" }, { "r": "4.6.0", "os": "win", "version": "0.2-3999", "date": "2026-06-20T07:27:06.000Z", "commit": "68eeb4556505a3319f3706591f711b68958adabb", "fileid": "538f218f07c75b451c4b77378cd5d104a79a1d9ba7f436dcfd9d0a18f5dc0b22", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/gavinsimpson/actions/runs/27864159968" } ] }