Changes in version 0.2-3 (2021-02-14) - Fix an issue causing vignette compiling to fail due to an update to the LaTeX package hyperref. Reported by: Brian Ripley. Changes in version 0.2-2 (2016-05-19) - NegBin() and ZINB() incorrectly specified the gamma part of the distribution. The shape argument to rgamma() should have been 1/alpha where alpha was used previously. Also clarified the paramterization of the negative binomial used by NegBin() and ZINB as the NB2 version. - NegBin() and ZINB() allow for vector alpha inputs. #25 Changes in version 0.2-1 (2016-02-28) - Minor package update to fix issues under R CMD check in the development version of R. Changes in version 0.2-0 (2015-05-27) - Jari Oksanen is now listed as a contributor to the package having added several new stochastic distributions. - The object returned by coenocline() now has S3 class "coenocline" and inherits from the "matrix" class. - A print() method has been added for coenocline() which displays some summary information and the first n lines of the simulated counts. The print() method uses a new internal function modelled on the way dplyr prints data frames. - A stack() method for coenocline() was added. This makes it much easier to reshape the simulated count data into a format suitable for use with ggplot or lattice graphics, or R's modelling functions. - An enhanced plot() method for coenocline() objects is provided, which can draw 1-d plots of single gradient simulations. - A persp() method is now provided which can produced 3-d perspective plots od simulations with 2 gradients. - Two new stochastic distributions were added by Jari Oksanen - Zero-inflated Binomial - Zero-inflated Beta-binomial - A new extractor function is provided, locations(), which extracts the gradient locations at which counts were simulated. Bug fixes - Jari Oksanen noticed an annoying but important bug in the 2D Beta response function; the gamma parameter for the second gradient was being ignored, and the value of gamma for the first gradient was used instead. Changes in version 0.1-0 (2014-08-01) - An R package for coenocline simulation; generating simulated species abundance or occurence data along one or two gradients - First public release of coenocliner on CRAN - Species response can be parameterised using either the classic Gaussian response model or the generalise beta response model - Random count or occurence data can be simulated from species responses using random draws from a Poisson, Negative Binomial, Binomial, Beta-binomial, ZIP, ZINB, or Bernoulli distribution with the parameterised response curve taken as the mean or expectation of the distribution to draw from - The main user-facing function is coenocline(). See ?coenocliner and ?coenocline for further details and examples of usage - A basic overview and introductory tutorial for coenocliner is available. Run browseVignettes("coenocliner") in R to access the PDF, R code and sources.