Package: ggvegan 0.2.1.9

ggvegan: 'ggplot2' Plots for the 'vegan' Package

Functions to produce 'ggplot2'-based plots of objects produced by functions in the 'vegan' package. Provides fortify(), autoplot(), and tidy() methods for many of 'vegan''s functions. The aim of 'ggvegan' is to make it easier to work within the 'tidyverse' with 'vegan'.

Authors:Gavin L. Simpson [aut, cre], Jari Oksanen [aut], Didzis Elferts [ctb]

ggvegan_0.2.1.9.tar.gz
ggvegan_0.2.1.9.zip(r-4.7)ggvegan_0.2.1.9.zip(r-4.6)ggvegan_0.2.1.9.zip(r-4.5)
ggvegan_0.2.1.9.tgz(r-4.6-any)ggvegan_0.2.1.9.tgz(r-4.5-any)
ggvegan_0.2.1.9.tar.gz(r-4.7-any)ggvegan_0.2.1.9.tar.gz(r-4.6-any)
ggvegan_0.2.1.9.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
ggvegan/json (API)
NEWS

# Install 'ggvegan' in R:
install.packages('ggvegan', repos = c('https://gavinsimpson.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/gavinsimpson/ggvegan/issues

Pkgdown/docs site:https://gavinsimpson.github.io

On CRAN:

Conda:

7.72 score 123 stars 306 scripts 967 downloads 15 exports 39 dependencies

Last updated from:476b0e7716. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK207
source / vignettesOK176
linux-release-x86_64OK221
macos-release-arm64OK134
macos-oldrel-arm64OK142
windows-develOK151
windows-releaseOK140
windows-oldrelOK183
wasm-releaseOK104

Exports:autolayerautoplotfortifygeom_ordi_arrowgeom_ordi_axisgeom_ordi_labelgeom_ordi_pointgeom_ordi_repelgeom_ordi_textggscoresordiggplotstat_vectorfitStatVectorfittidyvalid_layers

Dependencies:cliclustercpp11dplyrfarvergenericsggplot2ggrepelgluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvnlmepermutepillarpkgconfigpurrrR6RColorBrewerRcpprlangS7scalesstringistringrtibbletidyrtidyselectutf8vctrsveganviridisLitewithr

Readme and manuals

Help Manual

Help pageTopics
Adds a biplot arrow layer to an existing plotadd_biplot_arrows
Adds a biplot arrow layer to an existing plotadd_biplot_centroids
Adds species and site score layers to an existing plotadd_spp_site_scores
Scale Vectors to Dataarrow_mul
Add envfit Results to an ordiggplot Graphautolayer.envfit
Add ordisurf Result as Contours to an Ordination Graphautolayer.ordisurf
ggplot-based plot for objects of class '"anosim"'autoplot.anosim
ggplot-based plot for objects of class '"cca"'autoplot.cca
ggplot-based plot for objects of class '"dbrda"'autoplot.dbrda
ggplot-based plot for objects of class '"decorana"'autoplot.decorana
ggplot-based plot for 'envfit' objectsautoplot.envfit
Plot Fisher's log-seriesautoplot.fisherfit
ggplot-based plot for objects of class '"isomap"'autoplot.isomap
ggplot-based plot for objects of class '"metaMDS"'autoplot.metaMDS
Autoplot Graphics for vegan permustats Objectsautoplot.permustats
ggplot-based plot for objects of class '"poolaccum"'autoplot.poolaccum
ggplot-based plot for objects of class '"prc"'autoplot.prc
Plot Preston's log-normal model of species abundanceautoplot.prestonfit
Autoplot graphics for vegan rank-abundance modelsautoplot.rad autoplot.rad.frame autoplot.radfit autoplot.radfit.frame autoplot.radline
ggplot-based plot for objects of class ''rda''autoplot.rda
ggplot-based plot for objects of class '"vegan_pco"'autoplot.vegan_pco
Check user-supplied layers against list of valid layerscheck_user_layers
Fortify analysis of similarities (ANOSIM) resultsfortify.anosim tidy.anosim
Fortify a '"cca"' object.fortify.cca tidy.cca
Fortify a '"dbrda"' object.fortify.dbrda tidy.dbrda
Fortify a '"decorana"' object.fortify.decorana tidy.decorana
Fortify method for 'envfit' objectsfortify.envfit tidy.envfit
Tidied species rank abundance data and estimated Fisher's log-seriesfortify.fisherfit tidy.fisherfit
Fortify isometric feature mapping resultsfortify.isomap tidy.isomap
Fortify a '"mataMDS"' object.fortify.metaMDS tidy.metaMDS
Fortify permutation statisticsfortify.permustats tidy.permustats
Fortify extrapolated species richness of a species poolfortify.poolaccum tidy.poolaccum
Fortify a '"prc"' objectfortify.prc tidy.prc
Tidied species octave abundance datafortify.prestonfit tidy.prestonfit
Fortify results of ranked abundance distribution modelsfortify.rad fortify.rad.frame fortify.radfit fortify.radfit.frame fortify.radline tidy.rad tidy.rad.frame tidy.radfit tidy.radfit.frame tidy.radline
Fortify a '"rda"' object.fortify.rda tidy.rda
Fortify Rényi accumulation curvesfortify.renyiaccum tidy.renyiaccum
Fortify a '"vegan_pco"' object.fortify.vegan_pco tidy.vegan_pco
Add an Arrow Layer to an ordiggplot Graph.geom_ordi_arrow
Crosshair for Axes in Eigenvector Methods.geom_ordi_axis
Add a Label Layer to an ordiggplot Graphgeom_ordi_label
Add a Point Layer to an ordiggplot Graphgeom_ordi_point
Add Points and their Replled Labels to an ordiggplot Graphgeom_ordi_repel
Add a Text Layer to an ordiggplot Graphgeom_ordi_text
Extract the names of the dimensions to plot as a character vectorget_dimension_names
Adds a label layer using one of a set of common geomslabel_fun
List of layers to draw for a given vegan objectlayer_draw_list
Create a ggplot Objectggscores ordiggplot
Number of scoresscores_length
Add Fitted Vectors to Ordination plotsStatVectorfit stat_vectorfit
Valid layers for vegan objectsvalid_layers valid_layers.cca valid_layers.dbrda valid_layers.rda