Package: ggvegan 0.1.999

ggvegan: 'ggplot2' Plots for the 'vegan' Package

Functions to produce ggplot2-based plots of objects produced by functions in the vegan package.

Authors:Gavin L. Simpson [aut, cre], Jari Oksanen [aut], Didzis Elferts [ctb]

ggvegan_0.1.999.tar.gz
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ggvegan.pdf |ggvegan.html
ggvegan/json (API)
NEWS

# Install 'ggvegan' in R:
install.packages('ggvegan', repos = c('https://gavinsimpson.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/gavinsimpson/ggvegan/issues

On CRAN:

5.70 score 110 stars 230 scripts 10 exports 41 dependencies

Last updated 1 years agofrom:058c08c2f0. Checks:OK: 5 NOTE: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 29 2024
R-4.5-winNOTEOct 29 2024
R-4.5-linuxNOTEOct 29 2024
R-4.4-winOKOct 29 2024
R-4.4-macOKOct 29 2024
R-4.3-winOKOct 29 2024
R-4.3-macOKOct 29 2024

Exports:geom_ordi_arrowgeom_ordi_axisgeom_ordi_labelgeom_ordi_pointgeom_ordi_textggscoresordiggplotstat_vectorfitStatVectorfitvalid_layers

Dependencies:cliclustercolorspacecpp11dplyrfansifarvergenericsggplot2ggrepelgluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepermutepillarpkgconfigpurrrR6RColorBrewerRcpprlangscalesstringistringrtibbletidyrtidyselectutf8vctrsveganviridisLitewithr

Readme and manuals

Help Manual

Help pageTopics
Adds species and site score layers to an existing plotadd_spp_site_scores
Scale Vectors to Dataarrow_mul
ggplot-based plot for objects of class '"anosim"'autoplot.anosim
ggplot-based plot for objects of class '"cca"'autoplot.cca
ggplot-based plot for objects of class '"decorana"'autoplot.decorana
ggplot-based plot for 'envfit' objectsautoplot.envfit
Plot Fisher's log-seriesautoplot.fisherfit
ggplot-based plot for objects of class '"isomap"'autoplot.isomap
ggplot-based plot for objects of class '"metaMDS"'autoplot.metaMDS
ggplot-based plot for objects of class '"poolaccum"'autoplot.poolaccum
ggplot-based plot for objects of class '"prc"'autoplot.prc
Plot Preston's log-normal model of species abundanceautoplot.prestonfit
ggplot-based plot for objects of class ''rda''autoplot.rda
Check user-supplied layers against list of valid layerscheck_user_layers
Fortify analysis of similarities (ANOSIM) resultsfortify.anosim
Fortify a '"cca"' object.fortify.cca
Fortify a '"decorana"' object.fortify.decorana
Fortify method for 'envfit' objectsfortify.envfit
Tidied species rank abundance data and estimated Fisher's log-seriesfortify.fisherfit
Fortify isometric feature mapping resultsfortify.isomap
Fortify a '"mataMDS"' object.fortify.metaMDS
Fortify extrapolated species richness of a species poolfortify.poolaccum
Fortify a '"prc"' objectfortify.prc
Tidied species octave abundance datafortify.prestonfit
Add a biplot arrow layer to an ordiggplotgeom_ordi_arrow
Crosshair for axes in eigenvector methodsgeom_ordi_axis
Add a label layer to an ordiggplotgeom_ordi_label
Add a point layer to an ordiggplotgeom_ordi_point
Add a text layer to an ordiggplotgeom_ordi_text
Extract the names of the dimensions to plot as a character vectorgetDimensionNames
Adds a label layer using one of a set of common geomslabel_fun
List of layers to draw for a given vegan objectlayer_draw_list
Create a ggplot Objectggscores ordiggplot
Number of scoresscoresLength
Add Fitted Vectors to Ordination plotsStatVectorfit stat_vectorfit
Valid layers for vegan objectsvalid_layers valid_layers.cca valid_layers.rda